New Hotfix to Address Critical Issues in SCOM 2025 UR1

Microsoft has released a new hotfix (KB5080648) for System Center Operations Manager (SCOM) 2025 Update Rollup 1, addressing several critical issues discovered after UR1 deployment. This hotfix is highly recommended for all environments running SCOM 2025 UR1, particularly those experiencing resource pool failures, grey agents, or agent configuration issues.


Overview

This hotfix resolves functional and stability issues introduced in SCOM 2025 Update Rollup 1. It includes updated MSP packages for Agents, Management Servers, and Gateway Servers, ensuring your monitoring environment remains healthy and operational.

Prerequisite

Before applying KB5080648, you must already have:


Issues Fixed in This Hotfix

Microsoft reports that KB5080648 addresses the following problems:

1. MSP Files Not Updating Correctly

Due to an issue with the Simplified Server EXE, MSP files were not being updated in:

\Program Files\Microsoft System Center\Operations Manager\Server\AgentManagement\amd64\

This resulted in only RTM agent installation files being distributed across the environment.


2. Resource Pools Failing After UR1

After installing Update Rollup 1, many customers observed:

  • Resource pools failing to send heartbeat
  • All objects connected to a secondary management server becoming greyed out
  • Directly connected agents and gateways failing to function
  • The All Management Servers Resource Pool entering a failed state

This hotfix restores normal resource pool communication and recovery behavior.


3. Gateway Servers Stuck in “Requesting Config”

Gateways reporting to a secondary management server were getting stuck on:

  • Event 20124 – Requesting config
  • Never receiving updated configuration
  • Remaining in an unreachable or semi-functional state

KB5080648 corrects this behavior and restores normal gateway-to-management-server communication.


Files Included in This Hotfix

The hotfix package contains the following MSP files:

  • KB5080648-amd64-Agent.msp
  • KB5080648-amd64-Gateway.msp
  • KB5080648-amd64-Server.msp

These must be applied to their corresponding roles. Files can be downloaded using following link:

Microsoft Support — Update rollup 1 hotfix for System Center Operations Manager 2025 (KB5080648)


Summary

The KB5080648 hotfix is an important stability update for SCOM 2025 UR1 environments, addressing critical issues affecting:

  • Resource pool health
  • Gateway communication
  • Agent management file integrity

If you’re running SCOM 2025 Update Rollup 1, applying this hotfix should be treated as a high-priority action to ensure consistent monitoring across your environment.

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